Reading Polymers: Sequencing of Natural and Synthetic Macromolecules

The sequencing of biopolymers such as proteins and DNA is among the most significant scientific achievements of the 20th century. Indeed, modern chemical methods for sequence analysis allow reading and understanding the codes of life. Thus, sequencing methods currently play a major role in applications as diverse as genomics, gene therapy, biotechnology, and data storage. However, in terms of fundamental science, sequencing is not really a question of molecular biology but rather a more general topic in macromolecular chemistry. Broadly speaking, it can be defined as the analysis of comonomer sequences in copolymers. However, relatively different approaches have been used in the past to study monomer sequences in biological and manmade polymers. Yet, these “cultural” differences are slowly fading away with the recent development of synthetic sequence‐controlled polymers. In this context, the aim of this Minireview is to present an overview of the tools that are currently available for sequence analysis in macromolecular science.     

Mechano-optical behavior in poly (ethylene terephthalate)/poly (ether imide) blends

Mechano-optical behavior and related structural evolution during uniaxial stretching of melt miscible poly (ethylene terephthalate) (PET)/poly (ether imide) (PEI) blends were studied near their glass transition temperature using an instrumented machine that measures true stress, true strain and spectral birefringence simultaneously. Stretching from amorphous state, two distinct stress-optical regimes were observed at temperatures between T_g and T_cc (cold crystallization). Near T_g, a typical photoelastic behavior persists until a critical temperature above which temperature independent initial stress optical behavior is observed. At those temperatures above T_g, where glassy behavior is observed, decreasing stretching rate was also found to eliminate this glassy photo elastic regime leading to the observation of a linear initial stress optical behavior that becomes temperature independent as expected from linear stress optical rule. Increasing PEI concentration in the blends suppresses crystallizability and increases temperature at which initial elastic region disappears giving way to pure liquid behavior where linear stress optical behavior is observed. This is attributed to the increase and broadening of the glass transition temperature with the addition of noncrystallizable PEI. In PET/PEI blends, the stress-optical coefficient (SOC), determined in a linear stress optical regime, was found to increase linearly with the increase in PEI concentration.     

Calculated valence electronic structure of 3d metals for use in the X-ray intensity ratio studies

3d occupation numbers of the transition elements corresponding to various types of atomic configurations are calculated by means of the linear muffin-tin orbital (LMTO) method. This data is used with the multiconfiguration Dirac–Fock (MCDF) X-ray intensity ratios to estimate the electron populations of the 3d metals in alloys.     

Iterated Peiffer Pairings in the Moore Complex of a Simplicial Group

We introduce a pairing structure within the Moore complex NG of a simplicial group G and use it to investigate generators for NG _n D _n where D _n is the subgroup generated by degenerate elements. This is applied to the study of algebraic models for homotopy types.     

Indium selenide thin film preparation by sol–gel technique

Preparation and characterization of In–Se compound thin films prepared by sol–gel methods on glass substrate have been studied. X-ray diffraction analyses and optical transmission spectrum of In–Se compound thin film samples show that the fabricated sol–gel In–Se thin films features formed mainly as an In₂Se₃ crystal structure. From transmission spectra of In–Se thin films band gap energy were estimated approximately as ∼1.24 eV.     

Chemical constituents and biological activities of Dianthus elegans var. elegans

Chemical investigation of the aerial parts of Dianthus elegans var. elegans afforded two previously undescribed saponins, named dianosides M-N (1–2), together with four oleanane-type triterpenoid glycosides (3–6). Their structures were elucidated as 3-O-α-L-arabinofuranosyl-16α-hydroxyolean-12-ene-23α, 28β-dioic acid (1) and 3-O-α-L-arabinofuranosyl-(1 → 3)-β-D-glucopyranosyl 16α-hydroxyolean-12-ene-23α-oic acid, 28-O-β-D-glucopyranosyl-(1 → 6)-β-D-glycosyl ester (2) by chemical and extensive spectroscopic methods including IR, 1D, 2D NMR and HRESIMS. Both of the saponins were evaluated for their cytotoxicities against HEK-293, A-549 and HeLa human cancer cells using the MTT method. All compounds showed no substantial cytotoxic activity against tested cell lines. However, dianosides M-N and the n-butanol fraction exhibited considerable haemolysis in human erythrocyte cells. The immunomodulatory properties of dianosides M-N were also evaluated in activated whole blood cells by PMA plus ionomycin. Dianosides M-N increased IL-1β concentration significantly whereas the n-butanol fraction slightly augmented IL-1β secretion. All compounds did not change IL-2 and IFN-γ levels considerably.     

Investigation of bed shear stresses subject to external turbulence

The fluctuating bed shear stress has largely been investigated only for uniform channel flows and boundary layers. In practical engineering, the flow conditions are often modified due to the presence of various hydraulic structures. To what extent the modification affects the known characteristics of the bed shear stress is not clear. This study presents experimental results of the bed shear stress fluctuations, which are obviously subjected to external turbulence generated by superimposing artificial structures in the open channel flows. The statistical analysis of the measurements shows that the probability density function of the bed shear stress can be described by the lognormal function. Some associated relations concerning higher-order moments, skewness and kurtosis, which are derived from the lognormal function, are further compared with the experimental data. Physical implication of the skewed probability density distribution is finally discussed.     

On the complexation kinetics for metallization of organic layers: palladium onto a pyridine-terminated araliphatic thiol film

Palladium nanoparticles have been deposited electrochemically onto self-assembled monolayers (SAMs) of 4-(4-(4-pyridyl)phenyl)phenylmethanethiol. A pronounced correlation between the kinetics of the complexation between pyridine nitrogens and Pd cations and the sample potential has been observed. The amount of the Pd deposit significantly increases by adjusting the sample potential during the complexation step to values below the point of zero charge. The size of the spherical shaped Pd nanoparticles varies within a certain limit according to the amount of Pd(2+) ions initially coordinated on top of the SAM. The metallic state of these particles was confirmed by X-ray photoelectron spectroscopy and infrared reflection-absorption spectroscopy. Moreover, CO adsorption on the clean Pd deposit revealed further information about the crystallographic orientation of the nanoparticles.